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SRX17845659: Illumina amplicon next generation sequencing of Dirofilaria immitis: sample P620D_L_45689
1 ILLUMINA (Illumina MiSeq) run: 32,556 spots, 16.3M bases, 5.1Mb downloads

Design: First stage PCRs for Illumina Next Generation Sequencing (NGS) were performed in-house according to the 16S Metagenomic Sequencing Library Preparation instructions for the Illumina MiSeq system (Illumina, Australia). PCR products (25 L) were submitted to the Ramaciotti Centre for Genomics, The University of New South Wales, Australia for indexing (384), library preparation and NGS using Illumina MiSeq v2 250PE sequencing run.
Submitted by: The University of Sydney
Study: Testing for drug resistance in Dirofilaria immitis from Australian dogs
show Abstracthide Abstract
This study utilised phenotypic and genotypic assays to determine the presence of macrocyclic lactone resistant Dirofilaria immitis in Australia. We surveyed dogs from Queensland and New South Wales, Australia for the presence of D. immitis infection using an antigen test, quantitative Modified Knotts test, and qPCR targeting both D. immitis and the D. immitis symbiont Wolbachia. A phenotypic assay utilising a microfilarial suppression test was coupled with Illumina amplicon next generation sequencing of filtered microfilariae for SNPs previously associated with macrocyclic lactone resistance in isolates from the USA.
Sample: Illumina amplicon next generation sequencing targeting Locus 45689 in adult DNA sample
SAMN31234858 • SRS15367290 • All experiments • All runs
Library:
Name: P620D_L_45689
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 32,556 spots, 16.3M bases, 5.1Mb
Run# of Spots# of BasesSizePublished
SRR2185736232,55616.3M5.1Mb2022-10-11

ID:
24774744

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